NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,053.7 |
| Mean read quality |
8.5 |
| Median read length |
4,648.0 |
| Median read quality |
9.4 |
| Number of reads |
195,001.0 |
| Read length N50 |
6,371.0 |
| STDEV read length |
2,902.3 |
| Total bases |
985,473,892.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
194833 (99.9%) 984.9Mb |
| >Q7 |
182243 (93.5%) 926.6Mb |
| >Q10 |
61066 (31.3%) 317.6Mb |
| >Q12 |
913 (0.5%) 4.5Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (4706) |
| 2 |
13.2 (3352) |
| 3 |
13.2 (683) |
| 4 |
13.1 (6816) |
| 5 |
13.1 (6245) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
33249 (8.4) |
| 2 |
32486 (9.4) |
| 3 |
32171 (10.4) |
| 4 |
30293 (9.0) |
| 5 |
29589 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot