NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,241.9 |
| Mean read quality |
8.7 |
| Median read length |
3,770.0 |
| Median read quality |
9.5 |
| Number of reads |
47,072.0 |
| Read length N50 |
5,454.0 |
| STDEV read length |
2,587.6 |
| Total bases |
199,673,831.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
47052 (100.0%) 199.6Mb |
| >Q7 |
44901 (95.4%) 191.2Mb |
| >Q10 |
17126 (36.4%) 74.7Mb |
| >Q12 |
410 (0.9%) 1.6Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (1340) |
| 2 |
13.2 (2326) |
| 3 |
13.1 (1624) |
| 4 |
13.0 (853) |
| 5 |
13.0 (3411) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
23507 (10.0) |
| 2 |
23455 (8.8) |
| 3 |
23263 (7.9) |
| 4 |
22170 (9.7) |
| 5 |
21989 (8.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot