NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,373.8 |
| Mean read quality |
8.6 |
| Median read length |
5,050.0 |
| Median read quality |
9.5 |
| Number of reads |
156,784.0 |
| Read length N50 |
6,490.0 |
| STDEV read length |
2,773.5 |
| Total bases |
842,523,807.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
156711 (100.0%) 842.3Mb |
| >Q7 |
147854 (94.3%) 797.9Mb |
| >Q10 |
54778 (34.9%) 299.4Mb |
| >Q12 |
961 (0.6%) 4.8Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (1028) |
| 2 |
13.2 (714) |
| 3 |
13.1 (4328) |
| 4 |
13.1 (3670) |
| 5 |
13.1 (7464) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
34777 (10.0) |
| 2 |
31490 (7.3) |
| 3 |
29297 (8.1) |
| 4 |
28956 (10.8) |
| 5 |
26840 (10.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot