NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,215.6 |
| Mean read quality |
8.6 |
| Median read length |
4,851.0 |
| Median read quality |
9.5 |
| Number of reads |
93,069.0 |
| Read length N50 |
6,437.0 |
| STDEV read length |
2,833.3 |
| Total bases |
485,410,496.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
93015 (99.9%) 485.2Mb |
| >Q7 |
87767 (94.3%) 460.4Mb |
| >Q10 |
31626 (34.0%) 169.0Mb |
| >Q12 |
567 (0.6%) 2.8Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (1226) |
| 2 |
13.3 (8978) |
| 3 |
13.2 (2450) |
| 4 |
13.2 (984) |
| 5 |
13.1 (6982) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
30927 (7.4) |
| 2 |
25824 (10.0) |
| 3 |
25808 (8.3) |
| 4 |
24991 (8.9) |
| 5 |
24017 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot