NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,004.1 |
| Mean read quality |
8.6 |
| Median read length |
3,579.0 |
| Median read quality |
9.4 |
| Number of reads |
86,573.0 |
| Read length N50 |
4,897.0 |
| STDEV read length |
2,310.6 |
| Total bases |
346,648,933.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
86554 (100.0%) 346.6Mb |
| >Q7 |
81919 (94.6%) 329.3Mb |
| >Q10 |
27408 (31.7%) 112.0Mb |
| >Q12 |
381 (0.4%) 1.4Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (1371) |
| 2 |
13.2 (1366) |
| 3 |
13.0 (915) |
| 4 |
12.9 (1968) |
| 5 |
12.9 (4420) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
24416 (8.6) |
| 2 |
22722 (9.7) |
| 3 |
22387 (10.8) |
| 4 |
21567 (7.9) |
| 5 |
20710 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot