NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,581.4 |
| Mean read quality |
8.5 |
| Median read length |
2,931.0 |
| Median read quality |
9.3 |
| Number of reads |
140,857.0 |
| Read length N50 |
4,735.0 |
| STDEV read length |
2,455.9 |
| Total bases |
504,471,744.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
140778 (99.9%) 504.3Mb |
| >Q7 |
133157 (94.5%) 478.6Mb |
| >Q10 |
41975 (29.8%) 152.6Mb |
| >Q12 |
534 (0.4%) 1.7Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (573) |
| 2 |
13.3 (1061) |
| 3 |
13.1 (1229) |
| 4 |
13.1 (4334) |
| 5 |
13.0 (2720) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
25845 (8.6) |
| 2 |
25396 (10.9) |
| 3 |
24629 (7.7) |
| 4 |
24314 (8.7) |
| 5 |
24095 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot