NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,730.4 |
| Mean read quality |
8.7 |
| Median read length |
4,354.0 |
| Median read quality |
9.5 |
| Number of reads |
89,048.0 |
| Read length N50 |
5,823.0 |
| STDEV read length |
2,572.5 |
| Total bases |
421,234,082.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
88998 (99.9%) 421.1Mb |
| >Q7 |
83990 (94.3%) 399.1Mb |
| >Q10 |
32427 (36.4%) 155.1Mb |
| >Q12 |
770 (0.9%) 3.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.5 (1149) |
| 2 |
13.4 (6401) |
| 3 |
13.2 (1601) |
| 4 |
13.1 (1406) |
| 5 |
13.1 (453) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
25044 (9.2) |
| 2 |
23696 (11.0) |
| 3 |
23561 (10.2) |
| 4 |
22639 (11.4) |
| 5 |
22505 (8.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot