NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,661.8 |
| Mean read quality |
8.4 |
| Median read length |
3,209.5 |
| Median read quality |
9.2 |
| Number of reads |
48,686.0 |
| Read length N50 |
4,486.0 |
| STDEV read length |
2,189.8 |
| Total bases |
178,277,344.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
48648 (99.9%) 178.2Mb |
| >Q7 |
46192 (94.9%) 169.9Mb |
| >Q10 |
12727 (26.1%) 46.7Mb |
| >Q12 |
32 (0.1%) 0.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.0 (3499) |
| 2 |
12.8 (4308) |
| 3 |
12.7 (2015) |
| 4 |
12.6 (3089) |
| 5 |
12.4 (4565) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
26664 (10.3) |
| 2 |
20200 (8.1) |
| 3 |
19813 (8.8) |
| 4 |
19218 (10.6) |
| 5 |
18028 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot