NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,729.6 |
| Mean read quality |
8.6 |
| Median read length |
2,397.0 |
| Median read quality |
9.4 |
| Number of reads |
172,652.0 |
| Read length N50 |
3,328.0 |
| STDEV read length |
1,613.8 |
| Total bases |
471,271,567.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
172578 (100.0%) 471.1Mb |
| >Q7 |
163728 (94.8%) 448.2Mb |
| >Q10 |
52857 (30.6%) 144.0Mb |
| >Q12 |
740 (0.4%) 1.9Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (754) |
| 2 |
13.3 (605) |
| 3 |
13.3 (960) |
| 4 |
13.2 (2308) |
| 5 |
13.2 (936) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
21480 (8.4) |
| 2 |
20327 (8.8) |
| 3 |
18889 (10.6) |
| 4 |
18345 (11.2) |
| 5 |
18316 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot