NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,055.3 |
| Mean read quality |
8.5 |
| Median read length |
3,562.0 |
| Median read quality |
9.3 |
| Number of reads |
55,564.0 |
| Read length N50 |
5,156.0 |
| STDEV read length |
2,464.5 |
| Total bases |
225,328,756.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
55545 (100.0%) 225.3Mb |
| >Q7 |
52511 (94.5%) 213.7Mb |
| >Q10 |
16627 (29.9%) 68.2Mb |
| >Q12 |
123 (0.2%) 0.4Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.0 (515) |
| 2 |
12.9 (3754) |
| 3 |
12.7 (864) |
| 4 |
12.7 (2514) |
| 5 |
12.7 (2500) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
28258 (8.6) |
| 2 |
24525 (7.8) |
| 3 |
21749 (10.7) |
| 4 |
21250 (9.5) |
| 5 |
21143 (8.8) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot