NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,147.1 |
| Mean read quality |
8.4 |
| Median read length |
2,572.0 |
| Median read quality |
9.1 |
| Number of reads |
69,617.0 |
| Read length N50 |
3,980.0 |
| STDEV read length |
2,162.3 |
| Total bases |
219,091,268.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
69581 (99.9%) 219.0Mb |
| >Q7 |
65564 (94.2%) 207.5Mb |
| >Q10 |
18441 (26.5%) 60.4Mb |
| >Q12 |
186 (0.3%) 0.5Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (2452) |
| 2 |
13.3 (2468) |
| 3 |
13.0 (1016) |
| 4 |
12.9 (4487) |
| 5 |
12.8 (2733) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
22917 (7.8) |
| 2 |
21930 (7.7) |
| 3 |
20159 (8.9) |
| 4 |
19854 (8.8) |
| 5 |
19808 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot