NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,063.6 |
| Mean read quality |
8.5 |
| Median read length |
4,557.0 |
| Median read quality |
9.3 |
| Number of reads |
71,321.0 |
| Read length N50 |
6,550.0 |
| STDEV read length |
3,065.0 |
| Total bases |
361,140,243.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
71297 (100.0%) 361.1Mb |
| >Q7 |
67542 (94.7%) 343.4Mb |
| >Q10 |
20872 (29.3%) 108.7Mb |
| >Q12 |
125 (0.2%) 0.6Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.8 (7605) |
| 2 |
12.7 (2383) |
| 3 |
12.7 (1209) |
| 4 |
12.6 (9413) |
| 5 |
12.6 (7664) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
28800 (8.3) |
| 2 |
27520 (7.8) |
| 3 |
26426 (7.8) |
| 4 |
25430 (8.7) |
| 5 |
25090 (8.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot