NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,004.5 |
| Mean read quality |
8.5 |
| Median read length |
2,331.0 |
| Median read quality |
9.3 |
| Number of reads |
57,877.0 |
| Read length N50 |
4,320.0 |
| STDEV read length |
2,335.8 |
| Total bases |
173,892,152.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
57850 (100.0%) 173.8Mb |
| >Q7 |
54677 (94.5%) 164.8Mb |
| >Q10 |
17299 (29.9%) 52.0Mb |
| >Q12 |
180 (0.3%) 0.5Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (488) |
| 2 |
13.2 (1097) |
| 3 |
13.1 (3043) |
| 4 |
13.0 (4997) |
| 5 |
13.0 (1246) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
30462 (7.7) |
| 2 |
23359 (7.1) |
| 3 |
20227 (8.6) |
| 4 |
19200 (9.1) |
| 5 |
19052 (7.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot