NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,341.2 |
| Mean read quality |
8.5 |
| Median read length |
2,834.0 |
| Median read quality |
9.3 |
| Number of reads |
35,141.0 |
| Read length N50 |
4,291.0 |
| STDEV read length |
2,149.3 |
| Total bases |
117,414,157.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
35119 (99.9%) 117.4Mb |
| >Q7 |
33202 (94.5%) 111.2Mb |
| >Q10 |
10145 (28.9%) 33.7Mb |
| >Q12 |
53 (0.2%) 0.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.8 (1503) |
| 2 |
12.7 (3129) |
| 3 |
12.6 (1140) |
| 4 |
12.6 (727) |
| 5 |
12.4 (1472) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
21854 (9.5) |
| 2 |
20450 (9.0) |
| 3 |
19773 (11.1) |
| 4 |
18831 (9.5) |
| 5 |
18462 (9.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot