NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,617.1 |
| Mean read quality |
8.5 |
| Median read length |
4,223.0 |
| Median read quality |
9.3 |
| Number of reads |
64,466.0 |
| Read length N50 |
5,711.0 |
| STDEV read length |
2,584.7 |
| Total bases |
297,646,024.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
64445 (100.0%) 297.6Mb |
| >Q7 |
60943 (94.5%) 282.0Mb |
| >Q10 |
19363 (30.0%) 89.6Mb |
| >Q12 |
96 (0.1%) 0.4Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (2412) |
| 2 |
12.7 (4305) |
| 3 |
12.6 (2263) |
| 4 |
12.5 (1746) |
| 5 |
12.5 (3728) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
26197 (7.9) |
| 2 |
23931 (8.7) |
| 3 |
22912 (9.2) |
| 4 |
22539 (7.5) |
| 5 |
22519 (9.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot