NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,547.2 |
| Mean read quality |
8.5 |
| Median read length |
4,068.0 |
| Median read quality |
9.3 |
| Number of reads |
62,939.0 |
| Read length N50 |
5,874.0 |
| STDEV read length |
2,786.2 |
| Total bases |
286,197,447.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
62908 (100.0%) 286.1Mb |
| >Q7 |
59582 (94.7%) 271.9Mb |
| >Q10 |
18162 (28.9%) 82.6Mb |
| >Q12 |
92 (0.1%) 0.3Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.9 (615) |
| 2 |
12.8 (1767) |
| 3 |
12.7 (622) |
| 4 |
12.7 (3577) |
| 5 |
12.7 (2693) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
34520 (7.5) |
| 2 |
33921 (10.1) |
| 3 |
31889 (7.9) |
| 4 |
27810 (8.2) |
| 5 |
27246 (8.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot