NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,345.7 |
| Mean read quality |
8.5 |
| Median read length |
2,909.0 |
| Median read quality |
9.2 |
| Number of reads |
59,752.0 |
| Read length N50 |
4,336.0 |
| STDEV read length |
2,115.0 |
| Total bases |
199,913,025.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
59730 (100.0%) 199.9Mb |
| >Q7 |
56612 (94.7%) 190.3Mb |
| >Q10 |
16403 (27.5%) 56.0Mb |
| >Q12 |
121 (0.2%) 0.3Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.8 (723) |
| 2 |
12.8 (2831) |
| 3 |
12.7 (2996) |
| 4 |
12.6 (3606) |
| 5 |
12.6 (621) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
22867 (9.3) |
| 2 |
19868 (10.0) |
| 3 |
19334 (9.8) |
| 4 |
18732 (8.2) |
| 5 |
18728 (9.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot