NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,910.3 |
| Mean read quality |
8.7 |
| Median read length |
2,658.0 |
| Median read quality |
9.6 |
| Number of reads |
207,182.0 |
| Read length N50 |
3,463.0 |
| STDEV read length |
1,497.6 |
| Total bases |
602,958,313.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
206983 (99.9%) 602.5Mb |
| >Q7 |
193298 (93.3%) 563.9Mb |
| >Q10 |
80520 (38.9%) 236.4Mb |
| >Q12 |
974 (0.5%) 2.4Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (3866) |
| 2 |
13.0 (974) |
| 3 |
13.0 (5864) |
| 4 |
13.0 (3384) |
| 5 |
13.0 (794) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
19179 (10.8) |
| 2 |
17927 (8.7) |
| 3 |
16608 (11.9) |
| 4 |
16584 (8.6) |
| 5 |
16089 (10.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot