NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,401.7 |
| Mean read quality |
8.7 |
| Median read length |
2,912.0 |
| Median read quality |
9.5 |
| Number of reads |
57,280.0 |
| Read length N50 |
4,276.0 |
| STDEV read length |
2,133.8 |
| Total bases |
194,846,802.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
57254 (100.0%) 194.8Mb |
| >Q7 |
54134 (94.5%) 184.9Mb |
| >Q10 |
20719 (36.2%) 72.8Mb |
| >Q12 |
285 (0.5%) 0.8Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.1 (374) |
| 2 |
13.0 (1038) |
| 3 |
13.0 (4095) |
| 4 |
13.0 (2642) |
| 5 |
12.9 (1578) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
21627 (8.3) |
| 2 |
21576 (11.2) |
| 3 |
21287 (8.8) |
| 4 |
21179 (10.3) |
| 5 |
20101 (9.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot