NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,649.9 |
| Mean read quality |
8.8 |
| Median read length |
3,058.0 |
| Median read quality |
9.7 |
| Number of reads |
66,100.0 |
| Read length N50 |
4,673.0 |
| STDEV read length |
2,396.4 |
| Total bases |
241,256,800.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
66087 (100.0%) 241.2Mb |
| >Q7 |
63700 (96.4%) 233.2Mb |
| >Q10 |
26393 (39.9%) 99.4Mb |
| >Q12 |
376 (0.6%) 1.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (2165) |
| 2 |
13.0 (2801) |
| 3 |
12.9 (3144) |
| 4 |
12.8 (3481) |
| 5 |
12.8 (1970) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
24606 (9.0) |
| 2 |
22750 (9.7) |
| 3 |
21769 (10.6) |
| 4 |
21433 (8.9) |
| 5 |
20816 (11.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot