NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,208.1 |
| Mean read quality |
8.8 |
| Median read length |
2,745.0 |
| Median read quality |
9.7 |
| Number of reads |
60,396.0 |
| Read length N50 |
4,025.0 |
| STDEV read length |
1,992.4 |
| Total bases |
193,758,275.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
60378 (100.0%) 193.7Mb |
| >Q7 |
57920 (95.9%) 186.1Mb |
| >Q10 |
24040 (39.8%) 78.1Mb |
| >Q12 |
329 (0.5%) 0.9Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (2797) |
| 2 |
13.1 (2244) |
| 3 |
13.0 (1008) |
| 4 |
12.9 (1139) |
| 5 |
12.9 (1660) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
21971 (9.1) |
| 2 |
21523 (11.2) |
| 3 |
20935 (9.1) |
| 4 |
19975 (9.7) |
| 5 |
18299 (10.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot