NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,845.3 |
| Mean read quality |
8.9 |
| Median read length |
3,262.0 |
| Median read quality |
9.8 |
| Number of reads |
27,628.0 |
| Read length N50 |
5,085.0 |
| STDEV read length |
2,528.8 |
| Total bases |
106,237,395.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
27617 (100.0%) 106.2Mb |
| >Q7 |
26426 (95.6%) 101.9Mb |
| >Q10 |
11880 (43.0%) 46.7Mb |
| >Q12 |
191 (0.7%) 0.6Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.0 (1142) |
| 2 |
12.9 (899) |
| 3 |
12.9 (9973) |
| 4 |
12.9 (1755) |
| 5 |
12.7 (6741) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
23727 (8.0) |
| 2 |
21719 (10.2) |
| 3 |
21394 (10.6) |
| 4 |
20672 (9.0) |
| 5 |
18872 (8.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot