NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,538.3 |
| Mean read quality |
8.9 |
| Median read length |
4,209.0 |
| Median read quality |
9.8 |
| Number of reads |
156,189.0 |
| Read length N50 |
5,398.0 |
| STDEV read length |
2,431.0 |
| Total bases |
708,836,194.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
156169 (100.0%) 708.8Mb |
| >Q7 |
149502 (95.7%) 680.2Mb |
| >Q10 |
66537 (42.6%) 308.6Mb |
| >Q12 |
970 (0.6%) 4.3Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (3332) |
| 2 |
13.0 (3728) |
| 3 |
13.0 (2794) |
| 4 |
13.0 (2076) |
| 5 |
13.0 (4566) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
34752 (7.5) |
| 2 |
34722 (8.5) |
| 3 |
34483 (8.9) |
| 4 |
32900 (8.3) |
| 5 |
32540 (7.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot