NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,597.1 |
| Mean read quality |
8.8 |
| Median read length |
4,191.0 |
| Median read quality |
9.7 |
| Number of reads |
103,145.0 |
| Read length N50 |
5,796.0 |
| STDEV read length |
2,642.5 |
| Total bases |
474,166,091.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
103113 (100.0%) 474.1Mb |
| >Q7 |
98593 (95.6%) 454.5Mb |
| >Q10 |
43153 (41.8%) 204.5Mb |
| >Q12 |
709 (0.7%) 3.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (2489) |
| 2 |
13.2 (5627) |
| 3 |
13.1 (6948) |
| 4 |
13.1 (1547) |
| 5 |
13.0 (3174) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
30982 (8.8) |
| 2 |
26041 (10.7) |
| 3 |
25600 (8.5) |
| 4 |
25520 (7.4) |
| 5 |
24318 (11.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot