NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,922.1 |
| Mean read quality |
8.7 |
| Median read length |
2,494.0 |
| Median read quality |
9.6 |
| Number of reads |
115,737.0 |
| Read length N50 |
3,595.0 |
| STDEV read length |
1,782.5 |
| Total bases |
338,190,876.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
115708 (100.0%) 338.1Mb |
| >Q7 |
110259 (95.3%) 322.9Mb |
| >Q10 |
44219 (38.2%) 129.7Mb |
| >Q12 |
689 (0.6%) 1.7Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.5 (1395) |
| 2 |
13.1 (1962) |
| 3 |
13.0 (1565) |
| 4 |
13.0 (459) |
| 5 |
13.0 (2104) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
27985 (11.2) |
| 2 |
23080 (9.7) |
| 3 |
18777 (8.7) |
| 4 |
18411 (8.6) |
| 5 |
17772 (10.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot