NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,579.7 |
| Mean read quality |
8.8 |
| Median read length |
2,137.0 |
| Median read quality |
9.6 |
| Number of reads |
93,960.0 |
| Read length N50 |
3,226.0 |
| STDEV read length |
1,684.5 |
| Total bases |
242,384,033.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
93939 (100.0%) 242.3Mb |
| >Q7 |
90014 (95.8%) 232.8Mb |
| >Q10 |
35336 (37.6%) 92.4Mb |
| >Q12 |
761 (0.8%) 1.8Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (3765) |
| 2 |
13.1 (1800) |
| 3 |
13.1 (1000) |
| 4 |
13.1 (586) |
| 5 |
13.0 (986) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
18591 (11.1) |
| 2 |
18034 (9.9) |
| 3 |
17198 (11.2) |
| 4 |
17172 (6.7) |
| 5 |
16731 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot