NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,206.3 |
| Mean read quality |
8.9 |
| Median read length |
3,617.0 |
| Median read quality |
9.8 |
| Number of reads |
99,788.0 |
| Read length N50 |
5,488.0 |
| STDEV read length |
2,785.5 |
| Total bases |
419,739,856.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
99769 (100.0%) 419.7Mb |
| >Q7 |
95619 (95.8%) 402.8Mb |
| >Q10 |
42441 (42.5%) 181.4Mb |
| >Q12 |
662 (0.7%) 2.4Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (665) |
| 2 |
13.3 (2150) |
| 3 |
13.2 (3398) |
| 4 |
13.2 (3166) |
| 5 |
13.2 (2027) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
44055 (10.6) |
| 2 |
36646 (10.8) |
| 3 |
36068 (8.9) |
| 4 |
35228 (9.7) |
| 5 |
30663 (10.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot