NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,666.1 |
| Mean read quality |
8.8 |
| Median read length |
2,129.0 |
| Median read quality |
9.6 |
| Number of reads |
107,563.0 |
| Read length N50 |
3,533.0 |
| STDEV read length |
1,891.1 |
| Total bases |
286,773,518.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
107530 (100.0%) 286.7Mb |
| >Q7 |
103305 (96.0%) 276.0Mb |
| >Q10 |
41143 (38.3%) 112.5Mb |
| >Q12 |
822 (0.8%) 1.8Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.6 (1562) |
| 2 |
13.6 (395) |
| 3 |
13.4 (2568) |
| 4 |
13.4 (1400) |
| 5 |
13.1 (7241) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
22303 (7.6) |
| 2 |
21997 (8.8) |
| 3 |
21956 (7.2) |
| 4 |
21346 (7.0) |
| 5 |
21173 (10.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot