NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,765.0 |
| Mean read quality |
8.3 |
| Median read length |
3,161.0 |
| Median read quality |
9.1 |
| Number of reads |
101,647.0 |
| Read length N50 |
4,955.0 |
| STDEV read length |
2,492.0 |
| Total bases |
382,699,563.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
101611 (100.0%) 382.6Mb |
| >Q7 |
93967 (92.4%) 355.3Mb |
| >Q10 |
25915 (25.5%) 99.8Mb |
| >Q12 |
241 (0.2%) 0.8Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.8 (1583) |
| 2 |
12.7 (1352) |
| 3 |
12.7 (1930) |
| 4 |
12.6 (3761) |
| 5 |
12.6 (1051) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
25433 (8.4) |
| 2 |
25149 (8.6) |
| 3 |
24250 (8.8) |
| 4 |
23466 (7.2) |
| 5 |
23389 (8.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot