NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,844.0 |
| Mean read quality |
8.1 |
| Median read length |
3,261.0 |
| Median read quality |
8.9 |
| Number of reads |
125,530.0 |
| Read length N50 |
5,075.0 |
| STDEV read length |
2,520.9 |
| Total bases |
482,543,016.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
125405 (99.9%) 482.2Mb |
| >Q7 |
112850 (89.9%) 436.3Mb |
| >Q10 |
28080 (22.4%) 110.9Mb |
| >Q12 |
292 (0.2%) 0.9Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.0 (1374) |
| 2 |
12.9 (895) |
| 3 |
12.9 (3668) |
| 4 |
12.8 (2129) |
| 5 |
12.7 (1249) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
25594 (7.4) |
| 2 |
23550 (9.1) |
| 3 |
23401 (9.5) |
| 4 |
22987 (8.9) |
| 5 |
22804 (10.7) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot