NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,167.8 |
| Mean read quality |
8.3 |
| Median read length |
3,804.0 |
| Median read quality |
9.1 |
| Number of reads |
105,758.0 |
| Read length N50 |
5,192.0 |
| STDEV read length |
2,402.6 |
| Total bases |
440,774,135.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
105691 (99.9%) 440.6Mb |
| >Q7 |
96570 (91.3%) 405.1Mb |
| >Q10 |
27065 (25.6%) 114.6Mb |
| >Q12 |
262 (0.2%) 1.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.0 (2061) |
| 2 |
12.9 (2808) |
| 3 |
12.8 (3879) |
| 4 |
12.8 (3681) |
| 5 |
12.7 (3232) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
26793 (8.7) |
| 2 |
25680 (9.4) |
| 3 |
25679 (8.2) |
| 4 |
24935 (7.0) |
| 5 |
24469 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot