NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,270.9 |
| Mean read quality |
8.4 |
| Median read length |
3,689.0 |
| Median read quality |
9.2 |
| Number of reads |
77,421.0 |
| Read length N50 |
5,716.0 |
| STDEV read length |
2,820.1 |
| Total bases |
330,660,649.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
77399 (100.0%) 330.6Mb |
| >Q7 |
72550 (93.7%) 311.4Mb |
| >Q10 |
22061 (28.5%) 96.2Mb |
| >Q12 |
175 (0.2%) 0.6Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.0 (1591) |
| 2 |
12.9 (1439) |
| 3 |
12.9 (3773) |
| 4 |
12.8 (835) |
| 5 |
12.8 (2230) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
26791 (7.6) |
| 2 |
26088 (11.1) |
| 3 |
25700 (10.7) |
| 4 |
24398 (8.6) |
| 5 |
23256 (7.2) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot