NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,104.0 |
| Mean read quality |
8.4 |
| Median read length |
3,466.0 |
| Median read quality |
9.1 |
| Number of reads |
74,692.0 |
| Read length N50 |
5,500.0 |
| STDEV read length |
2,744.8 |
| Total bases |
306,533,575.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
74656 (100.0%) 306.4Mb |
| >Q7 |
69523 (93.1%) 286.8Mb |
| >Q10 |
20104 (26.9%) 84.6Mb |
| >Q12 |
253 (0.3%) 1.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.6 (1827) |
| 2 |
13.4 (4519) |
| 3 |
13.1 (4883) |
| 4 |
13.1 (2396) |
| 5 |
13.0 (5188) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
34828 (8.0) |
| 2 |
32656 (8.8) |
| 3 |
28413 (9.2) |
| 4 |
28093 (8.7) |
| 5 |
26432 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot