NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,150.7 |
| Mean read quality |
8.3 |
| Median read length |
3,244.0 |
| Median read quality |
9.1 |
| Number of reads |
70,896.0 |
| Read length N50 |
5,841.0 |
| STDEV read length |
3,140.2 |
| Total bases |
294,265,608.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
70864 (100.0%) 294.2Mb |
| >Q7 |
65453 (92.3%) 273.2Mb |
| >Q10 |
18535 (26.1%) 80.3Mb |
| >Q12 |
175 (0.2%) 0.7Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.0 (1071) |
| 2 |
12.9 (2250) |
| 3 |
12.9 (2328) |
| 4 |
12.9 (3981) |
| 5 |
12.8 (3052) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
42930 (6.6) |
| 2 |
35647 (8.4) |
| 3 |
34298 (11.0) |
| 4 |
34101 (7.8) |
| 5 |
32686 (8.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot