NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,939.9 |
| Mean read quality |
8.3 |
| Median read length |
5,358.0 |
| Median read quality |
9.1 |
| Number of reads |
107,606.0 |
| Read length N50 |
7,672.0 |
| STDEV read length |
3,706.8 |
| Total bases |
639,163,571.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
107584 (100.0%) 639.1Mb |
| >Q7 |
99979 (92.9%) 596.4Mb |
| >Q10 |
28331 (26.3%) 172.8Mb |
| >Q12 |
234 (0.2%) 1.3Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.3 (3735) |
| 2 |
12.9 (1573) |
| 3 |
12.8 (12893) |
| 4 |
12.8 (4375) |
| 5 |
12.7 (931) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
46138 (8.8) |
| 2 |
44495 (8.3) |
| 3 |
39331 (7.9) |
| 4 |
39265 (8.9) |
| 5 |
35686 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot