NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,792.8 |
| Mean read quality |
8.3 |
| Median read length |
5,250.0 |
| Median read quality |
9.1 |
| Number of reads |
82,842.0 |
| Read length N50 |
7,493.0 |
| STDEV read length |
3,574.0 |
| Total bases |
479,886,524.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
82815 (100.0%) 479.8Mb |
| >Q7 |
76458 (92.3%) 445.3Mb |
| >Q10 |
21133 (25.5%) 125.2Mb |
| >Q12 |
186 (0.2%) 1.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.1 (7547) |
| 2 |
13.0 (1727) |
| 3 |
12.9 (3177) |
| 4 |
12.9 (2530) |
| 5 |
12.8 (5302) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
36780 (7.9) |
| 2 |
34261 (8.8) |
| 3 |
33687 (10.8) |
| 4 |
33110 (8.3) |
| 5 |
31584 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot