NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,370.3 |
| Mean read quality |
8.3 |
| Median read length |
3,996.0 |
| Median read quality |
9.1 |
| Number of reads |
107,031.0 |
| Read length N50 |
5,415.0 |
| STDEV read length |
2,471.2 |
| Total bases |
467,761,958.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
106989 (100.0%) 467.6Mb |
| >Q7 |
98267 (91.8%) 431.8Mb |
| >Q10 |
27830 (26.0%) 124.1Mb |
| >Q12 |
292 (0.3%) 1.2Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (6123) |
| 2 |
13.1 (2122) |
| 3 |
13.1 (4342) |
| 4 |
13.1 (2457) |
| 5 |
13.0 (1505) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
25156 (8.6) |
| 2 |
23847 (11.1) |
| 3 |
23399 (8.7) |
| 4 |
23215 (7.8) |
| 5 |
22731 (11.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot