NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,201.1 |
| Mean read quality |
8.4 |
| Median read length |
3,756.0 |
| Median read quality |
9.1 |
| Number of reads |
122,752.0 |
| Read length N50 |
5,348.0 |
| STDEV read length |
2,500.7 |
| Total bases |
515,691,398.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
122703 (100.0%) 515.5Mb |
| >Q7 |
114180 (93.0%) 481.8Mb |
| >Q10 |
32649 (26.6%) 139.6Mb |
| >Q12 |
399 (0.3%) 1.5Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.4 (1367) |
| 2 |
13.0 (334) |
| 3 |
12.9 (2562) |
| 4 |
12.9 (1480) |
| 5 |
12.9 (1608) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
31614 (10.7) |
| 2 |
29028 (8.6) |
| 3 |
27841 (10.7) |
| 4 |
27633 (8.2) |
| 5 |
25299 (9.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot