NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,263.4 |
| Mean read quality |
8.3 |
| Median read length |
4,717.0 |
| Median read quality |
9.1 |
| Number of reads |
119,730.0 |
| Read length N50 |
6,818.0 |
| STDEV read length |
3,304.5 |
| Total bases |
630,192,345.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
119698 (100.0%) 630.1Mb |
| >Q7 |
111063 (92.8%) 587.2Mb |
| >Q10 |
31560 (26.4%) 169.3Mb |
| >Q12 |
299 (0.2%) 1.5Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.7 (6286) |
| 2 |
13.3 (4344) |
| 3 |
13.1 (3938) |
| 4 |
13.0 (3211) |
| 5 |
12.9 (2818) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
34810 (11.7) |
| 2 |
33038 (9.3) |
| 3 |
32229 (6.9) |
| 4 |
31586 (8.8) |
| 5 |
29761 (10.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot