NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,228.9 |
| Mean read quality |
8.4 |
| Median read length |
4,732.0 |
| Median read quality |
9.2 |
| Number of reads |
86,777.0 |
| Read length N50 |
6,781.0 |
| STDEV read length |
3,222.9 |
| Total bases |
453,745,234.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
86743 (100.0%) 453.6Mb |
| >Q7 |
81051 (93.4%) 425.5Mb |
| >Q10 |
23747 (27.4%) 127.0Mb |
| >Q12 |
235 (0.3%) 1.1Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
13.2 (1242) |
| 2 |
13.2 (8584) |
| 3 |
13.0 (1858) |
| 4 |
12.9 (940) |
| 5 |
12.8 (3897) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
52013 (10.3) |
| 2 |
33105 (6.2) |
| 3 |
31962 (8.5) |
| 4 |
31659 (9.5) |
| 5 |
30942 (8.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot