NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
2,453.5 |
| Mean read quality |
7.5 |
| Median read length |
1,938.5 |
| Median read quality |
8.2 |
| Number of reads |
38,556.0 |
| Read length N50 |
3,020.0 |
| STDEV read length |
1,840.4 |
| Total bases |
94,597,299.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
38510 (99.9%) 94.5Mb |
| >Q7 |
31486 (81.7%) 77.8Mb |
| >Q10 |
3112 (8.1%) 7.6Mb |
| >Q12 |
2 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.2 (553) |
| 2 |
12.1 (1692) |
| 3 |
12.0 (4889) |
| 4 |
12.0 (2489) |
| 5 |
12.0 (1842) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
18336 (8.5) |
| 2 |
18125 (8.3) |
| 3 |
17790 (8.3) |
| 4 |
17683 (9.1) |
| 5 |
17358 (6.9) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot