NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,233.0 |
| Mean read quality |
7.4 |
| Median read length |
3,640.0 |
| Median read quality |
8.1 |
| Number of reads |
39,030.0 |
| Read length N50 |
5,683.0 |
| STDEV read length |
2,737.1 |
| Total bases |
165,215,727.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
38896 (99.7%) 164.8Mb |
| >Q7 |
30198 (77.4%) 128.4Mb |
| >Q10 |
2776 (7.1%) 11.5Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.9 (1081) |
| 2 |
11.8 (713) |
| 3 |
11.8 (10700) |
| 4 |
11.7 (714) |
| 5 |
11.7 (1990) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
26130 (8.3) |
| 2 |
25003 (7.2) |
| 3 |
22236 (8.7) |
| 4 |
22096 (6.9) |
| 5 |
20368 (7.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot