NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,563.8 |
| Mean read quality |
7.5 |
| Median read length |
4,835.0 |
| Median read quality |
8.2 |
| Number of reads |
29,792.0 |
| Read length N50 |
7,830.0 |
| STDEV read length |
3,834.4 |
| Total bases |
165,755,849.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
29762 (99.9%) 165.6Mb |
| >Q7 |
24246 (81.4%) 135.8Mb |
| >Q10 |
2328 (7.8%) 13.1Mb |
| >Q12 |
1 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.3 (3279) |
| 2 |
12.0 (1501) |
| 3 |
11.8 (4984) |
| 4 |
11.7 (4154) |
| 5 |
11.6 (1549) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
28132 (10.1) |
| 2 |
27480 (8.2) |
| 3 |
26513 (8.4) |
| 4 |
26434 (9.1) |
| 5 |
25732 (6.3) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot