NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,452.3 |
| Mean read quality |
7.6 |
| Median read length |
4,776.5 |
| Median read quality |
8.3 |
| Number of reads |
22,708.0 |
| Read length N50 |
7,684.0 |
| STDEV read length |
3,715.0 |
| Total bases |
123,811,229.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
22683 (99.9%) 123.7Mb |
| >Q7 |
18969 (83.5%) 103.8Mb |
| >Q10 |
1891 (8.3%) 10.0Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.8 (3749) |
| 2 |
11.7 (1351) |
| 3 |
11.7 (3198) |
| 4 |
11.7 (1192) |
| 5 |
11.6 (562) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
28582 (9.5) |
| 2 |
28547 (9.2) |
| 3 |
25698 (7.2) |
| 4 |
25378 (7.2) |
| 5 |
24317 (9.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot