NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,901.7 |
| Mean read quality |
7.6 |
| Median read length |
3,454.0 |
| Median read quality |
8.3 |
| Number of reads |
25,157.0 |
| Read length N50 |
4,998.0 |
| STDEV read length |
2,334.0 |
| Total bases |
98,153,972.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
25137 (99.9%) 98.1Mb |
| >Q7 |
20798 (82.7%) 81.5Mb |
| >Q10 |
2137 (8.5%) 8.1Mb |
| >Q12 |
2 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.1 (7353) |
| 2 |
12.0 (1225) |
| 3 |
11.8 (7177) |
| 4 |
11.8 (544) |
| 5 |
11.7 (1207) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
18670 (8.4) |
| 2 |
17750 (7.0) |
| 3 |
17057 (8.0) |
| 4 |
16772 (6.7) |
| 5 |
16639 (7.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot