NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
3,669.1 |
| Mean read quality |
7.6 |
| Median read length |
3,156.0 |
| Median read quality |
8.3 |
| Number of reads |
31,657.0 |
| Read length N50 |
4,814.0 |
| STDEV read length |
2,316.4 |
| Total bases |
116,153,229.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
31620 (99.9%) 116.1Mb |
| >Q7 |
26371 (83.3%) 97.5Mb |
| >Q10 |
2617 (8.3%) 9.5Mb |
| >Q12 |
6 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.5 (5358) |
| 2 |
12.5 (558) |
| 3 |
12.3 (6555) |
| 4 |
12.2 (1870) |
| 5 |
12.2 (3008) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
27264 (7.7) |
| 2 |
18995 (8.2) |
| 3 |
18670 (8.7) |
| 4 |
18173 (7.6) |
| 5 |
17609 (7.1) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot