NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,464.2 |
| Mean read quality |
7.6 |
| Median read length |
4,008.0 |
| Median read quality |
8.2 |
| Number of reads |
38,637.0 |
| Read length N50 |
6,117.0 |
| STDEV read length |
2,923.6 |
| Total bases |
172,484,656.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
38605 (99.9%) 172.4Mb |
| >Q7 |
32121 (83.1%) 144.6Mb |
| >Q10 |
2984 (7.7%) 13.3Mb |
| >Q12 |
1 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.1 (989) |
| 2 |
11.9 (2742) |
| 3 |
11.8 (7259) |
| 4 |
11.8 (2027) |
| 5 |
11.7 (2790) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
33939 (7.0) |
| 2 |
23302 (8.4) |
| 3 |
21693 (8.4) |
| 4 |
21194 (7.2) |
| 5 |
20647 (9.4) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot