NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
5,324.3 |
| Mean read quality |
7.6 |
| Median read length |
4,925.0 |
| Median read quality |
8.3 |
| Number of reads |
29,737.0 |
| Read length N50 |
6,797.0 |
| STDEV read length |
3,042.4 |
| Total bases |
158,329,268.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
29713 (99.9%) 158.2Mb |
| >Q7 |
24712 (83.1%) 132.0Mb |
| >Q10 |
2288 (7.7%) 11.9Mb |
| >Q12 |
2 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
12.4 (712) |
| 2 |
12.2 (10259) |
| 3 |
11.9 (6801) |
| 4 |
11.8 (2351) |
| 5 |
11.8 (16098) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
32532 (7.9) |
| 2 |
29012 (7.6) |
| 3 |
25834 (8.1) |
| 4 |
22914 (6.5) |
| 5 |
22443 (10.0) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot