NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,069.6 |
| Mean read quality |
7.5 |
| Median read length |
3,376.0 |
| Median read quality |
8.2 |
| Number of reads |
28,119.0 |
| Read length N50 |
5,590.0 |
| STDEV read length |
2,812.0 |
| Total bases |
114,432,437.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
28068 (99.8%) 114.3Mb |
| >Q7 |
22728 (80.8%) 93.3Mb |
| >Q10 |
2051 (7.3%) 8.4Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.8 (2911) |
| 2 |
11.7 (6471) |
| 3 |
11.6 (12581) |
| 4 |
11.5 (8537) |
| 5 |
11.5 (2250) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
33694 (10.3) |
| 2 |
27145 (8.3) |
| 3 |
24691 (8.3) |
| 4 |
22817 (10.7) |
| 5 |
22578 (7.6) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot