NanoPlot statistics report
NanoPlot reports
Summary statistics
| General summary |
|
| Mean read length |
4,010.3 |
| Mean read quality |
7.5 |
| Median read length |
3,088.0 |
| Median read quality |
8.2 |
| Number of reads |
24,232.0 |
| Read length N50 |
5,731.0 |
| STDEV read length |
2,961.1 |
| Total bases |
97,177,166.0 |
| Number, percentage and megabases of reads above quality cutoffs |
|
| >Q5 |
24196 (99.9%) 97.1Mb |
| >Q7 |
19699 (81.3%) 79.5Mb |
| >Q10 |
1876 (7.7%) 7.4Mb |
| >Q12 |
0 (0.0%) 0.0Mb |
| >Q15 |
0 (0.0%) 0.0Mb |
| Top 5 highest mean basecall quality scores and their read lengths |
|
| 1 |
11.9 (1332) |
| 2 |
11.7 (3186) |
| 3 |
11.7 (1083) |
| 4 |
11.6 (2183) |
| 5 |
11.6 (2921) |
| Top 5 longest reads and their mean basecall quality score |
|
| 1 |
24509 (7.1) |
| 2 |
22845 (7.0) |
| 3 |
21798 (6.8) |
| 4 |
21704 (8.4) |
| 5 |
21528 (8.5) |
Plots
Weighted histogram of read lengths
Non weighted histogram of read lengths
Read lengths vs Average read quality plot using dots
Read lengths vs Average read quality kde plot